This codebase supports the Resequencing Informatics sub team from Vertebrate Genomes at EMBL-EBI.
This provides the infrastructure to track files and metadata to provide data coordination services for high throughput genomics and epigenomics projects.
Resequencing Informatics published a description of the data coordination for the 1000 Genomes Project in Nature Methods in 2012.
The 1000 Genomes Project: data management and community access Laura Clarke, Xiangqun Zheng-Bradley, Richard Smith, Eugene Kulesha, Chunlin Xiao, Iliana Toneva, Brendan Vaughan, Don Preuss, Rasko Leinonen, Martin Shumway, Stephen Sherry, Paul Flicek & The 1000 Genomes Project Consortium
Nature Methods 9, 459–462 (2012) doi:10.1038/nmeth.1974 Published online 27 April 2012
Please note the codebase has evolved since this paper was written so some details will have changed.
The projects which use this code base are
The 1000 Genomes Project
NextGen
Blueprint
HipSci
FAANG
IGSR
